Murids
This IPD-MHC RAT Database is intended to provide information about loci and alleles of the RT1 complex, the major histocompatibility complex of the laboratory rat (Rattus norvegicus). The various database entries are thoroughly controlled and include only full length sequences. It should be noted that the complete genomic sequence of the RT1 complex is available and is derived from a single haplotype, namely the RT1n haplotype of the BN inbred rat strain.
Alleles
List all Murids alleles
Species
Species belonging to the Murids group
Align
Multi locus inter- and intra- species alignment
Nomenclature
Information about the various inbred rat strains and their availability can be found at the homepage of the Institut für Versuchstierkunde und Zentrales Tierlaboratorium, Medizinische Hochschule Hannover, Germany. For more information please contact the group curator.
Rano-A1
8
Class I
Rano-A2
7
Class I
Rano-A
6
Class I
Rano-Db1
4
Class II
Rano-Da
3
Class II
Rano-CE5
3
Class I
Rano-CE16
3
Class I
Rano-Bb
3
Class I
Rano-CE1
2
Class I
Rano-N3
2
Class I
Above are listed the most populated genes within the Murids group. To list all the genes within the RT1 taxonomic group, please visit the species page.
Search RT1 alleles
Group curator
Dr. Lutz Walter - lwalter [at] gwdg.de
German Primate Center, Primate Genetics Department, Germany
References
- Maccari G, Robinson J, Ballingall K, Guethlein LA, Grimholt U, Kaufman J, Ho CS, De Groot NG, Flicek P, Bontrop RE, Hammond JA and Marsh SGE IPD-MHC 2.0: an improved inter-species database for the study of the major histocompatibility complex. Nucleic Acids Res. (2017), 45: D860–D864